Acta Crystallographica Section C: Structural Chemistry, ( ISI ), Volume (75), No (10), Year (2019-10) , Pages (1424-1433)

Title : ( The synergistic co-operation of N—H...O=P hydrogen bonds and C—H...OX weak intermolecular interactions (X is =P or —C) in the (CH3O)2P(O)(NH–NHC6F5) amidophosphoester: a combined X-ray crystallographic and theoretical study )

Authors: Banafsheh Vahdani Alviri , Mehrdad Pourayoubi , Abolghasem Farhadipour , Manpreet Kaur , Jerry P. Jasinski ,

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Abstract

The asymmetric unit of O,O\\\\\\\'-dimethyl [(2,3,4,5,6-pentafluorophenyl)hydrazinyl]phosphonate, C8H8F5N2O3P, is composed of two symmetry-independent molecules with significant differences in the orientations of the C6F5 and OMe groups. In the crystal structure, a one-dimensional assembly is mediated from classical N—H…O hydrogen bonds, which includes R22(8), D(2) and some higher-order graph-set motifs. By also considering weak C—H…O═P and C—H…O—C intermolecular interactions, a two-dimensional network extends along the ab plane. The strengths of the hydrogen bonds were evaluated using quantum chemical calculations with the GAUSSIAN09 software package at the B3LYP/6-311G(d,p) level of theory. The LP(O) to σ*(NH) and σ*(CH) charge-transfer interactions were examined according to second-order perturbation theory in natural bond orbital (NBO) methodology. The hydrogen-bonded clusters of molecules, including N—H…O and C—H…O interactions, were constructed as input files for the calculations and the strengths of the hydrogen bonds are as follows: N—H…O [R22(8)] > N—H…O [D(2)] > C—H…O. The decomposed fingerprint plots show that the contribution portions of the F…H/ H…F contacts in both molecules are the largest.

Keywords

, amidophosphoester; X, ray diffraction; hydrogen bonding; crystal structure; Hirshfeld surface analysis; computational chemistry
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@article{paperid:1076305,
author = {Vahdani Alviri, Banafsheh and Pourayoubi, Mehrdad and Farhadipour, Abolghasem and Manpreet Kaur and Jerry P. Jasinski},
title = {The synergistic co-operation of N—H...O=P hydrogen bonds and C—H...OX weak intermolecular interactions (X is =P or —C) in the (CH3O)2P(O)(NH–NHC6F5) amidophosphoester: a combined X-ray crystallographic and theoretical study},
journal = {Acta Crystallographica Section C: Structural Chemistry},
year = {2019},
volume = {75},
number = {10},
month = {October},
issn = {2053-2296},
pages = {1424--1433},
numpages = {9},
keywords = {amidophosphoester; X-ray diffraction; hydrogen bonding; crystal structure; Hirshfeld surface analysis; computational chemistry},
}

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%0 Journal Article
%T The synergistic co-operation of N—H...O=P hydrogen bonds and C—H...OX weak intermolecular interactions (X is =P or —C) in the (CH3O)2P(O)(NH–NHC6F5) amidophosphoester: a combined X-ray crystallographic and theoretical study
%A Vahdani Alviri, Banafsheh
%A Pourayoubi, Mehrdad
%A Farhadipour, Abolghasem
%A Manpreet Kaur
%A Jerry P. Jasinski
%J Acta Crystallographica Section C: Structural Chemistry
%@ 2053-2296
%D 2019

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