Scientific Reports, Volume (13), No (1), Year (2023-8)

Title : ( Prediction of serum anti-HSP27 antibody titers changes using a light gradient boosting machine (LightGBM) technique )

Authors: Nasrin Talkhi , Mehdi Jabbari Nooghabi , Habibollah Esmaily , Saba Maleki , Mojtaba Hajipoor , Gordon. A. Ferns , Majid Ghayour Mobarhan ,

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Abstract

Previous studies have proposed that heat shock proteins 27 (HSP27) and its anti-HSP27 antibody titers may play a crucial role in several diseases including cardiovascular disease. However, available studies has been used simple analytical methods. This study aimed to determine the factors that associate serum anti-HSP27 antibody titers using ensemble machine learning methods and to demonstrate the magnitude and direction of the predictors using PFI and SHAP methods. The study employed Python 3 to apply various machine learning models, including LightGBM, CatBoost, XGBoost, AdaBoost, SVR, MLP, and MLR. The best models were selected using model evaluation metrics during the K-Fold cross-validation strategy. The LightGBM model (with RMSE: 0.1900 ± 0.0124; MAE: 0.1471 ± 0.0044; MAPE: 0.8027 ± 0.064 as the mean ± sd) and the SHAP method revealed that several factors, including pro-oxidant-antioxidant balance (PAB), physical activity level (PAL), platelet distribution width, mid-upper arm circumference, systolic blood pressure, age, red cell distribution width, waist-to-hip ratio, neutrophils to lymphocytes ratio, platelet count, serum glucose, serum cholesterol, red blood cells were associated with anti-HSP27, respectively. The study found that PAB and PAL were strongly associated with serum anti-HSP27 antibody titers, indicating a direct and indirect relationship, respectively. These findings can help improve our understanding of the factors that determine anti-HSP27 antibody titers and their potential role in disease development.

Keywords

, PAB, PAL, Statistical methods, boosting machine, anti-HSP27, Prediction.
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@article{paperid:1095406,
author = {Nasrin Talkhi and Jabbari Nooghabi, Mehdi and Habibollah Esmaily and Saba Maleki and Mojtaba Hajipoor and Gordon. A. Ferns and Majid Ghayour Mobarhan},
title = {Prediction of serum anti-HSP27 antibody titers changes using a light gradient boosting machine (LightGBM) technique},
journal = {Scientific Reports},
year = {2023},
volume = {13},
number = {1},
month = {August},
issn = {2045-2322},
keywords = {PAB; PAL; Statistical methods; boosting machine; anti-HSP27; Prediction.},
}

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%0 Journal Article
%T Prediction of serum anti-HSP27 antibody titers changes using a light gradient boosting machine (LightGBM) technique
%A Nasrin Talkhi
%A Jabbari Nooghabi, Mehdi
%A Habibollah Esmaily
%A Saba Maleki
%A Mojtaba Hajipoor
%A Gordon. A. Ferns
%A Majid Ghayour Mobarhan
%J Scientific Reports
%@ 2045-2322
%D 2023

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