International Journal of Biological Macromolecules, ( ISI ), Volume (277), No (4), Year (2024-10) , Pages (134311-134328)

Title : ( Characterization, structural, and evolutionary analysis of an extremophilic GH5 endoglucanase from Bacillus sp. G131: Insights from ancestral sequence reconstruction )

Authors: Nazanin Gholampour-Faroji , Jafar Hemmat , Aliakbar Haddad-Mashadrizeh , Ahmad Asoodeh ,

Citation: BibTeX | EndNote

Abstract

Nature has developed extremozymes that catalyze complex reaction processes in extreme environmental conditions. Accordingly, a combined approach consisting of extremozyme screening, ancestral sequence resurrection (ASR), and molecular dynamic simulation was utilized to construct a developed endoglucanase. The primary experimental and in-silico data led to the prediction of a hypothetical sequence of endoglucanase (EG5-G131) using Bacillus sp. G131 confirmed by amplification and sequencing. EG5-G131 exhibited noticeable stability in a broad-pH range, several detergents, organic solvents, and temperatures up to 80 °C. The molecular weight, Vmax, and Km of the purified endoglucanase were estimated to be 36 kDa, 4.32 μmol/min, and 23.62 mg/ml, respectively. The calculated thermodynamic parameters for EG5-G131 confirmed its intrinsic thermostability. Computational analysis revealed Glu142 and Glu230 as active-site residues of the enzyme. Furthermore, the enzyme remained bound to cellotetraose at 298 K, 333 K, 343 K, and 353 K for 300 ns, consistent with our experimental data. ASR of EG5-G131 led to the introduction of ancestral ANC204 and ANC205, which show similar thermodynamic characteristics with the last Firmicute common ancestor. Finally, truncating loops from the N-terminal of two sequences created two variants with desirable thermal stability, suggesting the evolutionary deciphering of the functional domain of the GH5 family in Bacillus sp. G131.

Keywords

Bacillus Cellulose Thermostable enzymes Extremozymes Molecular dynamic simulation Protein engineering
برای دانلود از شناسه و رمز عبور پرتال پویا استفاده کنید.

@article{paperid:1099653,
author = {نازنین غلامپور- فاروجی and جعفر همت and Haddad-Mashadrizeh, Aliakbar and Asoodeh, Ahmad},
title = {Characterization, structural, and evolutionary analysis of an extremophilic GH5 endoglucanase from Bacillus sp. G131: Insights from ancestral sequence reconstruction},
journal = {International Journal of Biological Macromolecules},
year = {2024},
volume = {277},
number = {4},
month = {October},
issn = {0141-8130},
pages = {134311--134328},
numpages = {17},
keywords = {Bacillus Cellulose Thermostable enzymes Extremozymes Molecular dynamic simulation Protein engineering},
}

[Download]

%0 Journal Article
%T Characterization, structural, and evolutionary analysis of an extremophilic GH5 endoglucanase from Bacillus sp. G131: Insights from ancestral sequence reconstruction
%A نازنین غلامپور- فاروجی
%A جعفر همت
%A Haddad-Mashadrizeh, Aliakbar
%A Asoodeh, Ahmad
%J International Journal of Biological Macromolecules
%@ 0141-8130
%D 2024

[Download]