Journal of Tropical Medicine, Volume (2025), No (1), Year (2025-4)

Title : ( Genomic Characterization of NDM‐1 Harboring Extensively‐Drug Resistance Klebsiella pneumoniae Isolate From ICU‐Admitted Patient With COVID‐19 )

Authors: Abolfazl Rafati Zomorodi , Himen Salimizand , Niloufar Mohseni , maryam hafiz , HELIA NIKOUEIAN , Tahereh Gholamhosseini moghaddam , fatemeh aflakian ,

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Abstract

Currently, carbapenem-resistant Klebsiella pneumoniae (CR-KP) strains, particularly those producing New Delhi metallo-beta-lactamase (NDM), are increasingly recognized as a signifcant threat to global health. Te present study aimed to conduct a genomic analysis of an NDM-1-producing CR-KP strain isolated from patients with coronavirus disease of 2019 (COVID-19) admitted to the intensive care unit (ICU). Te K. pneumoniae isolate was obtained from the bronchoalveolar lavage fuid of a 68 year-old male patient hospitalized in the ICU with COVID-19 at Besat Hospital in Sanandaj, Iran. Te minimum inhibitory concentrations (MICs) for 15 antibiotics were determined using the VITEK 2 system. Genomic analysis of the isolate was performed using whole genome sequencing. Te CRKP-51 strain was identifed as an extensively drug-resistant (XDR) strain, exhibiting resistance to all tested antibiotics except tigecycline (MIC � 2 μg/mL). Te highest resistance values were recorded against sulfamethoxazole-trimethoprim (SXT), nitrofurantoin (NIT), and piperacillin- tazobactam (TZP), with MICs of ≥ 320, 256 μg/mL, and ≥ 128 μg/mL, respectively. Multilocus sequence typing revealed that CRKP-51 belonged to sequence type 15 (ST15). Te IncHI1B replicon type associated with this strain harbored several resistance genes, including bla NDM−1, armA, msrE, mphE, BRP (MBL), bla OXA−1 , aadA2, dfrA12, qnrB1, bla CTX−M−15 , and cat1. High-risk K. pneumoniae clones, such as ST15, are increasingly associated with antimicrobial resistance and the emergence of XDR strains in ICUs. Additionally, the global dissemination of the NDM enzyme occurs through various plasmid replicon types. Terefore, monitoring local epidemiology is essential for the efectiveness of antimicrobial stewardship programs.

Keywords

, bla NDM−1 ; carbapenemase; K. pneumoniae; SARS, CoV, 2; XDR
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@article{paperid:1103819,
author = {ابوالفضل رفعتی زمردی and هیمن سلیمی زند and Mohseni, Niloufar and Hafiz, Maryam and NIKOUEIAN, HELIA and Gholamhosseini Moghaddam, Tahereh and Aflakian, Fatemeh},
title = {Genomic Characterization of NDM‐1 Harboring Extensively‐Drug Resistance Klebsiella pneumoniae Isolate From ICU‐Admitted Patient With COVID‐19},
journal = {Journal of Tropical Medicine},
year = {2025},
volume = {2025},
number = {1},
month = {April},
issn = {1687-9686},
keywords = {bla NDM−1 ; carbapenemase; K. pneumoniae; SARS-CoV-2; XDR},
}

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%0 Journal Article
%T Genomic Characterization of NDM‐1 Harboring Extensively‐Drug Resistance Klebsiella pneumoniae Isolate From ICU‐Admitted Patient With COVID‐19
%A ابوالفضل رفعتی زمردی
%A هیمن سلیمی زند
%A Mohseni, Niloufar
%A Hafiz, Maryam
%A NIKOUEIAN, HELIA
%A Gholamhosseini Moghaddam, Tahereh
%A Aflakian, Fatemeh
%J Journal of Tropical Medicine
%@ 1687-9686
%D 2025

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